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Year Number of Results
2009 1
2013 1
2015 2
2016 2
2017 1
2018 3
2019 3
2020 6
2021 7
2022 1
2023 5
2024 3

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33 results

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Page 1
Community-driven roadmap for integrated disease maps.
Ostaszewski M, Gebel S, Kuperstein I, Mazein A, Zinovyev A, Dogrusoz U, Hasenauer J, Fleming RMT, Le Novère N, Gawron P, Ligon T, Niarakis A, Nickerson D, Weindl D, Balling R, Barillot E, Auffray C, Schneider R. Ostaszewski M, et al. Among authors: gawron p. Brief Bioinform. 2019 Mar 25;20(2):659-670. doi: 10.1093/bib/bby024. Brief Bioinform. 2019. PMID: 29688273 Free PMC article. Review.
AsthmaMap: An interactive knowledge repository for mechanisms of asthma.
Mazein A, Ivanova O, Balaur I, Ostaszewski M, Berzhitskaya V, Serebriyskaya T, Ligon T, Hasenauer J, De Meulder B, Overall RW, Roy L, Knowles RG, Wheelock CE, Dahlen SE, Chung KF, Adcock IM, Roberts G, Djukanovic R, Pellet J, Gawron P, Balling R, Maitland-van der Zee AH, Schneider R, Sterk PJ, Auffray C; U-BIOPRED Study Group,; eTRIKS Consortium. Mazein A, et al. Among authors: gawron p. J Allergy Clin Immunol. 2021 Mar;147(3):853-856. doi: 10.1016/j.jaci.2020.11.032. Epub 2020 Dec 9. J Allergy Clin Immunol. 2021. PMID: 33309742 No abstract available.
ReconMap: an interactive visualization of human metabolism.
Noronha A, Daníelsdóttir AD, Gawron P, Jóhannsson F, Jónsdóttir S, Jarlsson S, Gunnarsson JP, Brynjólfsson S, Schneider R, Thiele I, Fleming RM. Noronha A, et al. Among authors: gawron p. Bioinformatics. 2017 Feb 15;33(4):605-607. doi: 10.1093/bioinformatics/btw667. Bioinformatics. 2017. PMID: 27993782 Free PMC article.
PredictProtein - Predicting Protein Structure and Function for 29 Years.
Bernhofer M, Dallago C, Karl T, Satagopam V, Heinzinger M, Littmann M, Olenyi T, Qiu J, Schütze K, Yachdav G, Ashkenazy H, Ben-Tal N, Bromberg Y, Goldberg T, Kajan L, O'Donoghue S, Sander C, Schafferhans A, Schlessinger A, Vriend G, Mirdita M, Gawron P, Gu W, Jarosz Y, Trefois C, Steinegger M, Schneider R, Rost B. Bernhofer M, et al. Among authors: gawron p. Nucleic Acids Res. 2021 Jul 2;49(W1):W535-W540. doi: 10.1093/nar/gkab354. Nucleic Acids Res. 2021. PMID: 33999203 Free PMC article.
Visualization of automatically combined disease maps and pathway diagrams for rare diseases.
Gawron P, Hoksza D, Piñero J, Peña-Chilet M, Esteban-Medina M, Fernandez-Rueda JL, Colonna V, Smula E, Heirendt L, Ancien F, Groues V, Satagopam VP, Schneider R, Dopazo J, Furlong LI, Ostaszewski M. Gawron P, et al. Front Bioinform. 2023 Jul 12;3:1101505. doi: 10.3389/fbinf.2023.1101505. eCollection 2023. Front Bioinform. 2023. PMID: 37502697 Free PMC article.
COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.
Ostaszewski M, Niarakis A, Mazein A, Kuperstein I, Phair R, Orta-Resendiz A, Singh V, Aghamiri SS, Acencio ML, Glaab E, Ruepp A, Fobo G, Montrone C, Brauner B, Frishman G, Monraz Gómez LC, Somers J, Hoch M, Kumar Gupta S, Scheel J, Borlinghaus H, Czauderna T, Schreiber F, Montagud A, Ponce de Leon M, Funahashi A, Hiki Y, Hiroi N, Yamada TG, Dräger A, Renz A, Naveez M, Bocskei Z, Messina F, Börnigen D, Fergusson L, Conti M, Rameil M, Nakonecnij V, Vanhoefer J, Schmiester L, Wang M, Ackerman EE, Shoemaker JE, Zucker J, Oxford K, Teuton J, Kocakaya E, Summak GY, Hanspers K, Kutmon M, Coort S, Eijssen L, Ehrhart F, Rex DAB, Slenter D, Martens M, Pham N, Haw R, Jassal B, Matthews L, Orlic-Milacic M, Senff Ribeiro A, Rothfels K, Shamovsky V, Stephan R, Sevilla C, Varusai T, Ravel JM, Fraser R, Ortseifen V, Marchesi S, Gawron P, Smula E, Heirendt L, Satagopam V, Wu G, Riutta A, Golebiewski M, Owen S, Goble C, Hu X, Overall RW, Maier D, Bauch A, Gyori BM, Bachman JA, Vega C, Grouès V, Vazquez M, Porras P, Licata L, Iannuccelli M, Sacco F, Nesterova A, Yuryev A, de Waard A, Turei D, Luna A, Babur O, Soliman S, Valdeolivas A, Esteban-Medina M, Peña-Chilet M, Rian K, Helikar T, Puniya… See abstract for full author list ➔ Ostaszewski M, et al. Among authors: gawron p. Mol Syst Biol. 2021 Oct;17(10):e10387. doi: 10.15252/msb.202110387. Mol Syst Biol. 2021. PMID: 34664389 Free PMC article.
A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance.
Mazein A, Acencio ML, Balaur I, Rougny A, Welter D, Niarakis A, Ramirez Ardila D, Dogrusoz U, Gawron P, Satagopam V, Gu W, Kremer A, Schneider R, Ostaszewski M. Mazein A, et al. Among authors: gawron p. Front Bioinform. 2023 Jun 22;3:1197310. doi: 10.3389/fbinf.2023.1197310. eCollection 2023. Front Bioinform. 2023. PMID: 37426048 Free PMC article.
33 results