The prevalence (P) and average relative abundance (RA) of predominant operational taxonomic units (OTUs) (average relative abundance >1%) in the lung microbiome
| OTU ID | Species/subspecies | All | Stable | Exacerbation | Post-therapy | Recovery | |||||
| P | RA | P | RA | P | RA | P | RA | P | RA | ||
| Visits n | 476 | 106 | 137 | 136 | 97 | ||||||
| 4439603 | Streptococcus spp. | 82.1 | 13.1 | 83.0 | 12.3 | 78.8 | 11.6 | 82.4 | 13.4 | 85.6 | 15.8 |
| 4445466 | Streptococcus spp. | 44.7 | 10.1 | 47.2 | 12.1 | 45.3 | 8.9 | 46.3 | 10.1 | 39.2 | 9.5 |
| 509773 | Streptococcus spp. | 78.4 | 6.6 | 85.8 | 7.3 | 80.3 | 6.3 | 71.3 | 6.2 | 77.3 | 6.9 |
| 1059655 | Streptococcus spp. | 31.5 | 5.2 | 30.2 | 5.2 | 33.6 | 5.4 | 30.9 | 4.9 | 30.9 | 5.6 |
| 4462083 | Streptococcus infantis | 31.7 | 3.9 | 29.2 | 4.3 | 32.1 | 4.0 | 31.6 | 4.2 | 34.0 | 3.0 |
| 240755 | Haemophilus spp. | 69.7 | 10.7 | 61.3 | 9.5 | 72.3 | 12.4 | 71.3 | 9.5 | 73.2 | 11.3 |
| 956702 | Haemophilus spp. | 25.2 | 5.1 | 33.0 | 6.5 | 24.1 | 5.1 | 23.5 | 5.4 | 20.6 | 3.0 |
| 4385138 | Haemophilus spp. | 23.5 | 1.4 | 25.5 | 0.8 | 27.0 | 1.9 | 22.1 | 0.9 | 18.6 | 1.9 |
| 861881 | Moraxella spp. | 46.2 | 5.6 | 45.3 | 5.0 | 57.7 | 10.0 | 41.9 | 3.4 | 37.1 | 3.3 |
| 269930 | Pseudomonas veronii | 33.8 | 2.4 | 42.5 | 3.0 | 32.8 | 2.6 | 32.4 | 2.2 | 27.8 | 1.8 |
| 269901 | Pseudomonas spp. | 12.8 | 1.6 | 14.2 | 1.8 | 12.4 | 1.2 | 14.7 | 1.4 | 9.3 | 2.4 |
| 342427 | Veillonella dispar | 93.3 | 2.7 | 91.5 | 2.4 | 93.4 | 2.2 | 94.9 | 3.2 | 92.8 | 3.0 |
| 4326277 | Unclassified in Gemellaceae | 84.0 | 2.6 | 88.7 | 2.8 | 81.8 | 2.3 | 78.7 | 2.4 | 89.7 | 3.0 |
| 4411138 | Rothia mucilaginosa | 73.1 | 2.4 | 75.5 | 3.0 | 74.5 | 2.3 | 71.3 | 2.1 | 71.1 | 2.5 |
| 4396235 | Neisseria spp. | 58.6 | 2.2 | 60.4 | 2.3 | 59.9 | 2.2 | 55.9 | 2.4 | 58.8 | 1.8 |
| 12574 | Actinomyces spp. | 79.2 | 1.6 | 84.0 | 1.7 | 79.6 | 1.3 | 72.8 | 1.7 | 82.5 | 1.7 |
| 257492 | Granulicatella spp. | 83.8 | 1.4 | 86.8 | 1.4 | 85.4 | 1.2 | 80.9 | 1.3 | 82.5 | 1.7 |
| 4307391 | Prevotella melaninogenica | 39.1 | 1.1 | 41.5 | 1.1 | 39.4 | 1.2 | 40.4 | 1.2 | 34.0 | 0.8 |
Data are presented as %, unless otherwise stated. The OTUs were firstly grouped by their genera and then ranked by their RAs.