RT Journal Article
SR Electronic
T1 Peripheral blood gene expression and airway morphology on CT scan: The MESA COPD study
JF European Respiratory Journal
JO Eur Respir J
FD European Respiratory Society
SP P2276
VO 42
IS Suppl 57
A1 Kathleen M. Donohue
A1 Tess Pottinger
A1 Eric A. Hoffman
A1 Yongmei Liu
A1 Charles Powell
A1 Russ Tracy
A1 Benjamin M. Smith
A1 Daniel Rabinowitz
A1 R. Graham Barr
YR 2013
UL http://erj.ersjournals.com/content/42/Suppl_57/P2276.abstract
AB RATIONALE: Small studies of the airway transcriptome in bronchial brushings from subjects with chronic obstructive pulmonary disease (COPD) suggest a role for oxidative response genes and notch pathways. We hypothesized that gene expression of these pathways in peripheral blood mononuclear cells (PBMC) would be associated with airway dimensions on CT scan. METHODS: The Multi-Ethnic Study of Atherosclerosis (MESA) COPD recruited participants with COPD and controls age 50–79 years with ≥10 packyears without clinical cardiovascular disease. Airway wall thickness and lumen area were measured using APOLLO software (VIDA Diagnostics) on full-lung CTs. mRNA expression in PBMCs was measured using Hu 133 Plus 2.0 array (Affymetrix). Models regressed airway dimensions on gene expression measures adjusting for age, sex, and race/ethnicity, cohort, cigarette smoking status, pack-years, height and weight and FDR was used to adjusted for multiple corrections. RESULTS: Among 101 participants, airway lumen area was associated with altered expression of histone cluster 1, H2ab (HIST1H2AB) (q=0.01), which is implicated in DNA repair-induced chromatin remodeling. Airway wall thickness was associated with altered expression of coiled-coil domain containing 24 (CCDC24) (q=0.002) and KIAA1244 (q=0.005). Less is known about the function of these two genes. There were (n=57) and (n=192) probe sets with differential expression related to lumen area and wall thickness, respectively, in genes such as dual specificity phosphatases, myosin light chain, and metallopeptidase inhibitors. CONCLUSIONS: Airway dimensions on CT scan were associated with altered gene expression levels in PBMCs of HIST1H2AB, CCDC24 and KIAA1244.