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Supplementary material

Supplementary material

Files in this Data Supplement:

  • Supplementary material -
    Appendix S1: Affiliations of the members of the GenPhenReSa Consortium
    Appendix S2: Patient recruitment and phenotyping
    Appendix S3: SNP genotyping with the Affymetrix 100k Gene Chip Array
    Appendix S4: Selection criteria of SNPs for validation and fine mapping
    Appendix S5: SNPlex and TaqMan genotyping
    Appendix S6: Statistical analysis
    Appendix S7: Analysis of tissue-specific expression by RT-PCR
    Appendix S8: Bronchoalveolar lavage
    Appendix S9: mRNA isolation and real-time PCR
    Appendix S10: eQTL anaylsis
    Table S1: Summary of GWAS (panel A) and validation (panel B) results for the top 25 SNPs that were followed up
    Table S2: Results of the fine mapping stage (panel C)
    Table S3: Results of additional fine mapping
    Figure S1: Signal intensity/cluster plots
    Figure S2: Workflow diagram summarizing the different stages of the experiment including specification of quality control parameters and selection criteria
    Figure S3: Power calculation
    Figure S4: Genome-wide scan of sarcoidosis (panel A)
    Figure S5A-7C: Results of the eQTL analysis for the three most significant associated SNPs: rs7756421 (Figures S5A-C), rs1044670 (Figures S6A-C) and the significantly associated non-synonymous SNP rs1040461 (Figure S7A-C)
    Web Resources
    Supplementary References

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