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Dynamics of SARS-CoV-2 shedding in the respiratory depends on the severity of disease in COVID-19 patients

Dieter Munker, Andreas Osterman, Hans Stubbe, Maximilian Muenchhoff, Tobias Veit, Tobias Weinberger, Michaela Barnikel, Jan-Niclas Mumm, Katrin Milger, Elham Khatamzas, Sarah Klauss, Clemens Scherer, Johannes C. Hellmuth, Clemens Giessen-Jung, Michael Zoller, Tobias Herold, Stephanie Stecher, Enrico N. de Toni, Christian Schulz, Nikolaus Kneidinger, Oliver T. Keppler, Jürgen Behr, Julia Mayerle, Stefan Munker
European Respiratory Journal 2021; DOI: 10.1183/13993003.02724-2020
Dieter Munker
1Department of Medicine 5, Comprehensive Pneumology Center (CPC-M), Member of the German Center for Lung Research (DZL), University Hospital, Ludwig Maximilian University of Munich (LMU), Munich, Germany
10contributed equally
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Andreas Osterman
2Max von Pettenkofer Institute and Gene Center, Virology, National Reference Center for Retroviruses, Ludwig Maximilian University, Munich, Germany
3German Center for Infection Research, Partner Site Munich, Munich, Germany and Associated Partner Site Munich, Munich, Germany
10contributed equally
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Hans Stubbe
4COVID-19 Registry of the LMU Munich (CORKUM), University Hospital, LMU Munich, Munich, Germany
5Department of Medicine 2, University Hospital, Ludwig Maximilian University of Munich (LMU), Munich, Germany
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Maximilian Muenchhoff
2Max von Pettenkofer Institute and Gene Center, Virology, National Reference Center for Retroviruses, Ludwig Maximilian University, Munich, Germany
3German Center for Infection Research, Partner Site Munich, Munich, Germany and Associated Partner Site Munich, Munich, Germany
4COVID-19 Registry of the LMU Munich (CORKUM), University Hospital, LMU Munich, Munich, Germany
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Tobias Veit
1Department of Medicine 5, Comprehensive Pneumology Center (CPC-M), Member of the German Center for Lung Research (DZL), University Hospital, Ludwig Maximilian University of Munich (LMU), Munich, Germany
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Tobias Weinberger
6Emergency Department, University Hospital, LMU Munich, Munich, Germany; Department of Medicine 1, Ludwig Maximilian University of Munich (LMU), Munich, Germany; German Center for Cardiovascular Research (DZHK), Partner Site Munich Heart Alliance, Munich, Germany
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Michaela Barnikel
1Department of Medicine 5, Comprehensive Pneumology Center (CPC-M), Member of the German Center for Lung Research (DZL), University Hospital, Ludwig Maximilian University of Munich (LMU), Munich, Germany
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Jan-Niclas Mumm
7Department of Urology, University Hospital, Ludwig Maximilian University of Munich (LMU), Munich, Germany
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Katrin Milger
1Department of Medicine 5, Comprehensive Pneumology Center (CPC-M), Member of the German Center for Lung Research (DZL), University Hospital, Ludwig Maximilian University of Munich (LMU), Munich, Germany
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Elham Khatamzas
4COVID-19 Registry of the LMU Munich (CORKUM), University Hospital, LMU Munich, Munich, Germany
8Department of Medicine 3, University Hospital, Ludwig Maximilian University of Munich (LMU), Munich, Germany
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Sarah Klauss
5Department of Medicine 2, University Hospital, Ludwig Maximilian University of Munich (LMU), Munich, Germany
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Clemens Scherer
4COVID-19 Registry of the LMU Munich (CORKUM), University Hospital, LMU Munich, Munich, Germany
6Emergency Department, University Hospital, LMU Munich, Munich, Germany; Department of Medicine 1, Ludwig Maximilian University of Munich (LMU), Munich, Germany; German Center for Cardiovascular Research (DZHK), Partner Site Munich Heart Alliance, Munich, Germany
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Johannes C. Hellmuth
4COVID-19 Registry of the LMU Munich (CORKUM), University Hospital, LMU Munich, Munich, Germany
8Department of Medicine 3, University Hospital, Ludwig Maximilian University of Munich (LMU), Munich, Germany
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Clemens Giessen-Jung
8Department of Medicine 3, University Hospital, Ludwig Maximilian University of Munich (LMU), Munich, Germany
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Michael Zoller
9Department of Anaesthesiology, University Hospital, Ludwig Maximilian University of Munich (LMU), Munich, Germany
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Tobias Herold
8Department of Medicine 3, University Hospital, Ludwig Maximilian University of Munich (LMU), Munich, Germany
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Stephanie Stecher
5Department of Medicine 2, University Hospital, Ludwig Maximilian University of Munich (LMU), Munich, Germany
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Enrico N. de Toni
5Department of Medicine 2, University Hospital, Ludwig Maximilian University of Munich (LMU), Munich, Germany
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Christian Schulz
5Department of Medicine 2, University Hospital, Ludwig Maximilian University of Munich (LMU), Munich, Germany
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Nikolaus Kneidinger
1Department of Medicine 5, Comprehensive Pneumology Center (CPC-M), Member of the German Center for Lung Research (DZL), University Hospital, Ludwig Maximilian University of Munich (LMU), Munich, Germany
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Oliver T. Keppler
2Max von Pettenkofer Institute and Gene Center, Virology, National Reference Center for Retroviruses, Ludwig Maximilian University, Munich, Germany
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Jürgen Behr
1Department of Medicine 5, Comprehensive Pneumology Center (CPC-M), Member of the German Center for Lung Research (DZL), University Hospital, Ludwig Maximilian University of Munich (LMU), Munich, Germany
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Julia Mayerle
5Department of Medicine 2, University Hospital, Ludwig Maximilian University of Munich (LMU), Munich, Germany
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Stefan Munker
5Department of Medicine 2, University Hospital, Ludwig Maximilian University of Munich (LMU), Munich, Germany
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Tables

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  • TABLE 1a

    Baseline characteristics of the study population

    Non-Severe disease No mechanical ventilationSevere disease Mechanical Ventilation necessaryp-Value
    n=92n=51 (55.4%)n=41 (44.6%)
    Age, mean±sd60.2±15.857.9±18.163.1±12.70.258
    Male, n (%)71 (77.3%)36 (70.6%)34 (82.9%)0.22
    Continuous oxygen insufflation, n (%)61 (66.3%)21 (41.2%)41 (100%)<0.001
    Admission to ICU, n (%)47 (51.1%)9 (17.6%)41 (100%)<0.001
    Days of mechanical ventilation±sdn.a.22.6±14.1n.a.
    Days of hospitalisation±sd18.5±13.413.1±7.825.3±15.6<0.001
    Use of ECMO, n (%)5 (5.4%)n.a.5 (12.2%)n.a.
    Days of ECMO usen.a.13.6±3.8n.a.
    ECMO mortality, n (%)n.a.3 (60%)n.a.
    Discharge, n (%)66 (72.5%)45 (88.2%)21 (47.2%)<0.001
    Fatal, n (%)7 (7.6%)0 (0.0%)7 (17.9%)0.003
    Presence of COVID-19 typical radiological changes, n (%)85 (92.4%)44 (86.3%)41 (100%)0.013
    Initial viral load in nose swabs (copies·mL−1)±sd12.8×106±41.1×10612.6×106±43.1×10613.0×106±39.9×1060.127
    Initial viral load in endotracheal aspirate (copies·mL−1)±sdn.a.67.2×106±273×106n.a.
    Duration of viral shedding in days (with twice confirmed negativity)±sd18.7±12.013.9±9.5 (n=16)25.8±11.8 (n=18)0.025
    Persistent viral shedding (≥17 days), n (%)44 (47.8%)14 (27.5%)30 (73.2%)<0.001
    Time to first testing in days±sd7.4±4.76.5±4.08.4±5.30.12
    Comorbidities n (%)
     Arterial hypertension48 (52.2%)24 (47.1%)24 (58.5%)0.30
     Diabetes mellitus Type 218 (19.6%)8 (15.7%)10 (24.4%)0.43
     Coronary artery disease15 (16.3%)9 (17.6%)6 (14.6%)0.78
     COPD11 (12.0%)4 (7.8%)7 (17.1%)0.21
     Immunosuppression22 (23.9%)13 (25.5%)9 (22.0%)0.81
    Charlson comorbidity index±sd2.5±1.82.5±1.92.6±1.70.62

    Data are mean (sd) or n (%). p values were calculated by Mann-Whitney U test or χ² test, as appropriate. Severe disease was defined by the need of mechanical ventilation. COVID-19 typical changes included either ground glass opacities or diffuse bilateral infiltrates. Duration of nasopharyngeal viral shedding was defined by the time between symptom begin and last positivity for viral shedding in standardized nose swabs or endotracheal aspirates.

    • TABLE 1b

      Baseline characteristics of the study population

      Non-Severe disease No mechanical ventilationSevere disease Mechanical Ventilation necessaryp-Value
      n=92n=51 (55.4%)n=41 (44.6%)
      Inflammation parameters
       Initial CRP (mg·dL−1)7.9±9.04.7±5.212.6±11.3<0.001
       Peak CRP (mg·dL−1)15.4±12.18.5±7.925.6±9.8<0.001
       Initial PCT (ng·mL−1)0.41±0.730.22±0.330.68±1.04<0.001
       Peak PCT (ng·mL−1)4.14±13.72.95±14.25.91±12.9<0.001
       Initial IL-6 (pg·mL−1)189.3±737.875.3±292.4359.9±1095.5<0.001
       Peak IL-6 (pg·mL−1)841.8±2300.5118.9±321.71916.3±3352.2<0.001
       Initial WBCs (G·L−1)10.8±31.66.2±3.09.5±5.0<0.001
       Peak WBCs (G·L−1)18.1±43.28.5±4.021.5±9.7<0.001
      Specific medication
       Use of broad spectrum antibiotics#n=58 (63.0%)19 (37.3%)39 (95.1%)0.01
       Use of Azithromycinn=49 (53.3%)20 (39.2%)29 (70.7%)0.14
       Use of antiviral agents¶n=9 (9.8%)4 (7.8%)5 (12.2%)0.78
       Use of hydroxchloroquinn=24 (26.1%)8 (15.7%)16 (39.0%)0.09
       Use of prednisolonen=3 (3.3%)3 (7.3%)
       Use of tocilicumabn=4 (4.4%)1 (1.1%)3 (3.3%)0.23

      Inflammation parameters and specific medication of subgroups.

      CRP: C-reactive protein; PCT: procalcitonin; IL-6: Interleukin 6; WBC: White blood cell count.

      #Meropenem or piperacillin and tazobactam.

      ¶Lopinavir/ritonavir (n=8) or Tamiflu (n=1).

      • TABLE 2

        Cox-Regression analysis of factors associated with prolonged SARS-Cov-2 positivity

        Univariate analysisMultivariate analysis
        SignificanceHazard Ratio95% confidence intervalSignificanceHazard ratio95% confidence interval
        LowerHigherLowerHigher
        age0.3351.0130.9871.0410.8310.9950.9541.03
        sex (m=1, f=2)0.4151.3950.6273.1020.0772.5310.9057.073
        Disease severity (severe=1, non-severe=0)0.0751.8940.9393.8240.0253.2601.1629.147
        Oxygen insufflation necessary (yes=1, no=0)0.5731.3210.5023.4730.0573.9600.96116.319
        Hydroxychloroquin therapy (yes=1, no=0)0.0820.4900.2191.0950.2630.5970.2421.474
        Lopinavir/Ritonavir treatment (yes=1, no=0)0.7961.1490.4013.2960.3841.7130.5095.765
        Immunsuppressive treatment (Tocilizumab/Prednisolon/others; yes=1, no=0)0.2331.7230.7044.2150.1102.7480.7949.511
        Diabetes Mellitus (yes=1, no=0)0.9530.9750.4222.2540.7041.2430.4043.825
        Arterial hypertension (yes=1, no=0)0.6211.1930.5932.4010.5720.7650.3021.939
        Coronary artery disease (yes=1, no=0)0.7871.1410.4402.9590.9680.9780.3262.930
        Charlson Score (0–7)0.4251.0820.8911.3140.8501.0360.7191.493
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      Dynamics of SARS-CoV-2 shedding in the respiratory depends on the severity of disease in COVID-19 patients
      Dieter Munker, Andreas Osterman, Hans Stubbe, Maximilian Muenchhoff, Tobias Veit, Tobias Weinberger, Michaela Barnikel, Jan-Niclas Mumm, Katrin Milger, Elham Khatamzas, Sarah Klauss, Clemens Scherer, Johannes C. Hellmuth, Clemens Giessen-Jung, Michael Zoller, Tobias Herold, Stephanie Stecher, Enrico N. de Toni, Christian Schulz, Nikolaus Kneidinger, Oliver T. Keppler, Jürgen Behr, Julia Mayerle, Stefan Munker
      European Respiratory Journal Jan 2021, 2002724; DOI: 10.1183/13993003.02724-2020

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      Dynamics of SARS-CoV-2 shedding in the respiratory depends on the severity of disease in COVID-19 patients
      Dieter Munker, Andreas Osterman, Hans Stubbe, Maximilian Muenchhoff, Tobias Veit, Tobias Weinberger, Michaela Barnikel, Jan-Niclas Mumm, Katrin Milger, Elham Khatamzas, Sarah Klauss, Clemens Scherer, Johannes C. Hellmuth, Clemens Giessen-Jung, Michael Zoller, Tobias Herold, Stephanie Stecher, Enrico N. de Toni, Christian Schulz, Nikolaus Kneidinger, Oliver T. Keppler, Jürgen Behr, Julia Mayerle, Stefan Munker
      European Respiratory Journal Jan 2021, 2002724; DOI: 10.1183/13993003.02724-2020
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