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Enhanced tuberculosis outbreak investigation using whole genome sequencing and IGRA

Pieter W. Smit, Tuula Vasankari, Hanna Aaltonen, Marjo Haanperä, Nicola Casali, Harri Marttila, Jane Marttila, Päivi Ojanen, Aino Ruohola, Petri Ruutu, Francis Drobniewski, Outi Lyytikäinen, Hanna Soini
European Respiratory Journal 2014; DOI: 10.1183/09031936.00125914
Pieter W. Smit
1European Public Health Microbiology Training Programme (EUPHEM), European Centre for Disease Prevention and Control (ECDC), Stockholm, Sweden
2Dept of Infectious Disease Surveillance and Control, National Institute for Health and Welfare, Helsinki and Turku, Finland
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  • For correspondence: Pieter.smit@thl.fi
Tuula Vasankari
3Dept of Respiratory Diseases, Turku University Hospital, Turku, Finland
4Finnish Lung Health Association (FILHA), Helsinki, Finland
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Hanna Aaltonen
3Dept of Respiratory Diseases, Turku University Hospital, Turku, Finland
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Marjo Haanperä
2Dept of Infectious Disease Surveillance and Control, National Institute for Health and Welfare, Helsinki and Turku, Finland
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Nicola Casali
5Dept of Infectious Diseases and Immunity, Imperial College, London, UK
6Centre for Immunology and Infectious Disease, Blizard Institute, Queen Mary University of London, London, UK
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Harri Marttila
7Dept of Hospital Hygiene and Infection Control, Turku University Hospital, Turku, Finland
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Jane Marttila
8Infection Control Unit, Welfare Division, City of Turku, Turku, Finland
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Päivi Ojanen
3Dept of Respiratory Diseases, Turku University Hospital, Turku, Finland
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Aino Ruohola
9Dept of Pediatrics and Adolescent Medicine, Turku University Hospital, Turku, Finland
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Petri Ruutu
2Dept of Infectious Disease Surveillance and Control, National Institute for Health and Welfare, Helsinki and Turku, Finland
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Francis Drobniewski
5Dept of Infectious Diseases and Immunity, Imperial College, London, UK
6Centre for Immunology and Infectious Disease, Blizard Institute, Queen Mary University of London, London, UK
10National Mycobacterium Reference Laboratory, London, UK
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Outi Lyytikäinen
2Dept of Infectious Disease Surveillance and Control, National Institute for Health and Welfare, Helsinki and Turku, Finland
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Hanna Soini
2Dept of Infectious Disease Surveillance and Control, National Institute for Health and Welfare, Helsinki and Turku, Finland
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Extract

To the Editor:

Whole genome sequencing (WGS) is a new powerful technology for characterisation of bacterial genomes and has been used successfully to investigate Mycobacterium tuberculosis isolates associated with tuberculosis (TB) outbreaks and to elucidate mutations conferring drug resistance [1–6]. Enhanced contact investigation and improved diagnosis and treatment of latent TB infection (LTBI) are an important strategy for TB control and elimination [7–10].

Between February 2012 and July 2013, 14 TB cases (12 confirmed by culture, two clinically confirmed cases) associated with an outbreak were identified in Turku, Finland. The median age of the TB cases was 19 years (range 16–32 years). Four cases were Finnish born, nine were foreign born with an East-African origin and one was foreign born with a Central European origin. Social network analysis, WGS and interferon-γ release assays (IGRAs) were used in an ongoing outbreak investigation to complement the traditional contact investigation and to assess the public health relevance of these methods.

Traditional contact investigation methods were used in accordance with the Finnish guidelines. All the identified contacts were interviewed, clinically assessed and screened for active TB by chest radiography. Additionally, classmates and other close contacts (aged <35 years) of sputum smear-positive TB cases were tested for LTBI by IGRA (QuantiFERON-TB Gold

  • Received June 19, 2014.
  • Accepted August 12, 2014.
  • ©ERS
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Vol 61 Issue 3 Table of Contents
European Respiratory Journal: 61 (3)
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Enhanced tuberculosis outbreak investigation using whole genome sequencing and IGRA
Pieter W. Smit, Tuula Vasankari, Hanna Aaltonen, Marjo Haanperä, Nicola Casali, Harri Marttila, Jane Marttila, Päivi Ojanen, Aino Ruohola, Petri Ruutu, Francis Drobniewski, Outi Lyytikäinen, Hanna Soini
European Respiratory Journal Jan 2014, erj01259-2014; DOI: 10.1183/09031936.00125914

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Enhanced tuberculosis outbreak investigation using whole genome sequencing and IGRA
Pieter W. Smit, Tuula Vasankari, Hanna Aaltonen, Marjo Haanperä, Nicola Casali, Harri Marttila, Jane Marttila, Päivi Ojanen, Aino Ruohola, Petri Ruutu, Francis Drobniewski, Outi Lyytikäinen, Hanna Soini
European Respiratory Journal Jan 2014, erj01259-2014; DOI: 10.1183/09031936.00125914
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