Epigenome-wide association studies for common human diseases

VK Rakyan, TA Down, DJ Balding, S Beck - Nature Reviews Genetics, 2011 - nature.com
Despite the success of genome-wide association studies (GWASs) in identifying loci associated
with common diseases, a substantial proportion of the causality remains unexplained. …

[HTML][HTML] DNA methylation aging clocks: challenges and recommendations

…, AE Teschendorff, W Wagner, K Zhang, VK Rakyan - Genome biology, 2019 - Springer
Epigenetic clocks comprise a set of CpG sites whose DNA methylation levels measure
subject age. These clocks are acknowledged as a highly accurate molecular correlate of …

Metastable epialleles in mammals

VK Rakyan, ME Blewitt, R Druker, JI Preis, E Whitelaw - Trends in Genetics, 2002 - cell.com
There are some mammalian alleles that display the unusual characteristic of variable
expressivity in the absence of genetic heterogeneity. It has recently become evident that this is …

DNA methylation profiling of human chromosomes 6, 20 and 22

F Eckhardt, J Lewin, R Cortese, VK Rakyan, J Attwood… - Nature …, 2006 - nature.com
DNA methylation is the most stable type of epigenetic modification modulating the transcriptional
plasticity of mammalian genomes. Using bisulfite DNA sequencing, we report high-…

Human aging-associated DNA hypermethylation occurs preferentially at bivalent chromatin domains

VK Rakyan, TA Down, S Maslau, T Andrew… - Genome …, 2010 - genome.cshlp.org
There is a growing realization that some aging-associated phenotypes/diseases have an
epigenetic basis. Here, we report the first genome-scale study of epigenomic dynamics during …

Transgenerational inheritance of epigenetic states at the murine AxinFu allele occurs after maternal and paternal transmission

VK Rakyan, S Chong, ME Champ… - Proceedings of the …, 2003 - National Acad Sciences
Phenotypic variation that cannot be explained by genetic or environmental heterogeneity
has intrigued geneticists for decades. The molecular basis of this phenomenon, however, is …

A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis

TA Down, VK Rakyan, DJ Turner, P Flicek, H Li… - Nature …, 2008 - nature.com
DNA methylation is an indispensible epigenetic modification required for regulating the
expression of mammalian genomes. Immunoprecipitation-based methods for DNA methylome …

[HTML][HTML] DNA methylation profiling of the human major histocompatibility complex: a pilot study for the human epigenome project

VK Rakyan, T Hildmann, KL Novik, J Lewin, J Tost… - PLoS …, 2004 - journals.plos.org
The Human Epigenome Project aims to identify, catalogue, and interpret genome-wide DNA
methylation phenomena. Occurring naturally on cytosine bases at cytosine–guanine …

An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)

VK Rakyan, TA Down, NP Thorne, P Flicek… - Genome …, 2008 - genome.cshlp.org
We report a novel resource (methylation profiles of DNA, or mPod) for human genome-wide
tissue-specific DNA methylation profiles. mPod consists of three fully integrated parts, …

BLUEPRINT to decode the epigenetic signature written in blood

…, PG Pelicci, H Pendeville, B Porse, V Rakyan… - Nature …, 2012 - nature.com
Last October, scientists gathered in Amsterdam to celebrate the start of BLUEPRINT (http://www.
blueprint-epigenome. eu/), an EU-funded consortium that will generate epigenomic …