Copyright ©ERS Journals Ltd 2002 doi: 10.1183/09031936.02.01942001
Factors associated with unknown aetiology in patients with community-acquired pneumonia1 Medizinische Universitäts-Poliklinik Bonn, Germany. 2 Serveis de Pneumologia, 3 Malalties Infeccioses, 4 Microbiologia, Hospital Clinic Universitat de Barcelona, Spain. 5 Berugsgenossenschaftliche Klinik Bergmannsheil-Universitätskliniken Innere Medizin, Bochum, Germany CORRESPONDENCE: A. Torres, Hospital Clinic i Provincial, UVIR Servei de Pneumologia, Villarroel 170, 08036, Barcelona. Fax: 34 932275454. E-mail: atorres@medicina.ub.es Keywords: aetiology, epidemiology, pneumonia
Received: October 22, 2001
This study was supported by Commisionat per a Universitats i Recerca de la Generalitat de Catalunya,1997 SGR 00086, IDIBAPS Hospital Clinic Barcelona, and FISS 98/0138.
Despite comprehensive diagnostic work-up, the aetiology of community-acquired pneumonia (CAP) remains undetermined in 3060% of cases. The authors studied factors associated with undiagnosed pneumonia. Patients hospitalised with CAP and being evaluated by two blood cultures, at least one valid lower respiratory tract sample, and serology on admission were prospectively recorded. Patients who had received antimicrobial pretreatment were excluded. Patients with definite or probable aetiology were compared to those with undetermined aetiology by uni- and multivariable analysis. A total 204 patients were eligible for the study. The aetiology remained undetermined in 82 (40%) patients, whereas a definite aetiology could be established in 89 (44%) and a probable one in 33 (16%). In multivariable analysis, factors associated with undetermined aetiology included age >70 yrs, renal and cardiac comorbidity, and nonalveolar infiltrates on the chest radiograph. There was no association of undiagnosed pneumonia with mortality. Age and host factors were associated with unknown aetiology of community-acquired pneumonia. Some of these cases may also represent fluid volume overload mimicking pneumonia. The aetiology of community-acquired pneumonia (CAP) has been studied in various regions and settings. While these studies differ considerably in patient populations, diagnostic methodology, and presence of confounders, one intriguing constant finding is the failure to detect a pathogen in 3060% of cases 19. Among the factors which may explain this observation, ambulatory antimicrobial pretreatment is the most attractive. Accordingly, there is evidence from the literature that the majority of cases of unknown aetiology may be caused by Streptococcus pneumoniae, a pathogen which is easily missed after one single dose of antimicrobial treatment 1, 10. Conversely, the recognition of Legionella pneumophila and Chlamydia pneumoniae has taught that unrecognised pathogens may represent important causes of CAP. Finally, comorbid conditions may represent important diagnostic confounders, either associated with distinct pathogens or as mimics of pneumonia. A prospective study was therefore conducted in patients with CAP in order to identify factors associated with unknown aetiology. Since the authors were particularly interested in factors other than antimicrobial pretreatment, only previously untreated patients were selected. The prognostic implications of failure to detect microbial aetiology were also studied.
Eligibility criteria All patients who presented to the emergency department of the Hospital Clinic I Provincial, a 1,000-bed tertiary care teaching hospital in Barcelona (Spain) during a 2-yr period were prospectively studied. Emergency care physicians were instructed to identify patients with pulmonary infiltrates and to report these patients immediately to a respiratory or infectious disease specialist on call for the purpose of this study.
In order to be eligible for this study, the following entry criteria had to be fulfilled: 1) CAP, as defined by a new infiltrate on the chest radiograph, symptoms compatible with a lower respiratory tract infection, and no alternative diagnosis emerging during follow-up; 2) absence of severe immunosuppression, as defined by a condition associated with a significant risk of opportunistic infection (solid organ or bone marrow transplantation, neutropenia <1x109 L1, treatment with oral corticosteroids in daily doses The following lower respiratory tract samples were accepted as valid: 1) sputum sample with >25 granulocytes and <10 epithelial cells per low power field total magnification x100 in the Gram stain; 2) protected specimen brush (PSB); 3) bronchoalveolar lavage (BAL); and 4) tracheobronchial aspirate (TBAS, retrieved via the endotracheal tube in intubated patients).
Data recording
Definitions
Microbiological evaluation Validated sputum, blood culture samples, pleural fluid, and undiluted and serially diluted TBAS, PSB, and BAL fluid samples were plated on the following media: blood-sheep agar, Centers for Disease Control agar, chocolate agar as well as Sabouraud agar. The identification of microorganisms was performed according to standard methods 13.
The aetiology was regarded to be probable when the causative organism was identified in sputum. It was considered to be definite if one of the following criteria were met: 1) blood cultures yielding a bacterial or fungal pathogen (in the absence of an apparent extrapulmonary focus); 2) bacterial growth in cultures of TBAS In addition to these criteria, pleural fluid cultures yielding a bacterial pathogen, and a positive urinary antigen for L. pneumophila were accepted as definitely diagnostic. Growth of fungi in respiratory samples was only considered diagnostic in case of positive blood cultures for Candida spp., or isolation of Histoplasma capsulatum or Aspergillus fumigatus from lower respiratory tract cultures.
Statistical analysis For multivariable analysis, a logistic regression model with forward stepwise selection was employed. The problems associated with multivariable analysis were addressed as follows. Stringent entry criteria (p<0.10 in univariable analyses) reduced the number of candidate variables to avoid over-fitting. To minimise the possibility of including two highly correlated variables into the statistical model a stepwise forward model was chosen (p<0.05). Interactions were analysed pairwise by entering an interaction term into the logistic regression analysis. Results are reported separately when interaction was found (p<0.05). All variables remained in their original dimension in the initial analysis to avoid bias induced by arbitrary cut-offs. Results of all multivariable analyses are reported as adjusted odds ratio, 95% confidence intervals (CI) and exact p-values. The initial multivariable model was repeated in a larger population that fulfilled all criteria except the completeness of the diagnostic sampling to control for bias induced by the selection criteria. Results are expressed as mean±sd. All p-values presented refer to two-tailed analyses.
Patients Overall 719 episodes were entered into the initial database. The following patients were excluded: no or previous hospital admission (n=50), severe immunosuppression (n=47), HIV-infection (n=50), alternative diagnosis (n=13), previous antimicrobial treatment (n=135). The remaining population (n=424) formed the larger population. Of these, the following had to be excluded additionally: no blood cultures at admission (n=127), no valid respiratory tract sample (n=72), no paired serology (n=21). Thus, after the application of all exclusion criteria, 204 of 719 episodes were selected for this analysis (28%).
Aetiology
The aetiologies as they were identified according to the given definitions as well as the corresponding diagnostic criteria are summarised in table 1
A probable aetiology was established in 33 of 122 cases (27%). A definite aetiology was identified in 89 of 122 cases (73%), based on serology or antigen-testing in 45 of 122 cases (37%), on blood cultures in 31 of 122 cases (25%), on TBAS in eight of 122 cases (7%), on pleural fluid in three of 122 cases (3%) or on either PSB or BAL in two of 122 cases (2%). No differences in the number of diagnostic procedures performed were found when patients with aetiology of their episode of CAP were compared to patients without: sputum (97 of 122 (80%) versus 57 of 82 (70%); p=0.104), TBAS (19 of 122 (16%) versus nine of 82 (11%); p=0.349), PSB, BAL (10 of 122 (8%) versus four of 82 (5%); p=0.358), and pleural fluid (12 of 122 (10%) versus five of 82 (6%); p=0.343), respectively. S. pneumoniae was identified as the causative microorganism in 38 of 204 patients (19%), whereas "atypical" microorganisms (Chlamydia spp., Mycoplasma spp., or Coxiella spp.) were the second largest diagnostic group (28 of 204 patients, 14%). H. influenzae was identified in 12 of 204 cases (6%) and other Gram-negative bacteria (Pseudomonas aeruginosa, Klebsiella pneumoniae, or Escherichia coli) were recovered in 14 of 204 patients (7%).
Analysis of patients with unknown aetiology
Comorbidity The presence of a comorbidity seemed to lower the diagnostic yield (nondiagnostic: 65 of 82, 79% versus diagnostic: 83 of 122 (68%), p=0.078; table 2
Clinical data on admission and chest radiographs
The analysis of the radiographs on admission showed that alveolar appearance of the infiltrate was less common (nondiagnostic: 48 of 78 (62%) versus diagnostic: 91 of 121 (75%), p=0.040), whereas a mixed pattern was significantly more often in the group of patients with undetermined aetiology (nondiagnostic: 24 of 78 (30%) versus diagnostic: 20 of 121 (17%), p=0.018; table 3
Multivariable analysis
Overall, 21 cases had at least one missing value. Thus, 183 of 204 (90%) of the patients could be included into the multivariable analysis (table 4
Patients aged 70 yrs had a two-fold risk of remaining without an aetiology when age was categorised for further analysis according to the group median (table 4 70 yrs and the presence of a cardiac comorbidity. This interaction is explained by the fact that the patients with both risk factors were more likely to remain without aetiology (nondiagnostic: 17 of 82 (21%) versus diagnostic: eight of 122 (7%), p=0.002). An age 70 yrs also interacted with variables other than alveolar infiltrates. This interaction was also due to the disproportionally high percentage of patients with both risk factors in the undiagnosed group (nondiagnostic: 19 of 78 (24%) versus diagnostic: 12 of 121 (10%), p=0.006).
Aetiology according to identified risk groups
Analysis in the larger population A total of 424 of the 719 patients included in the database qualified for the larger population (60%). In this group, 188 of 424 patients remained without probable or definite aetiology (44%). Overall, 384 of 424 (95%) were entered into the multivariable analysis. Cardiac comorbidity was the most important confounding factor for the sampling effort in this analysis (nondiagnostic: 52 of 188 (28%) versus diagnostic: 31 of 236 (13%), p<0.001, adjusted odds ratio: 2.6, 95% CI: 1.64.4, p<0.001).
Antimicrobial treatment
Outcome The 30-day in-hospital mortality of patients with CAP included in this study was 12 of 204 (6%), without differences between the diagnostic groups (nondiagnostic: three of 82 (4%) versus diagnostic: nine of 122 (7%), 95% CI 3.29.2; p=0.368, Fisher's exact test). The 30-day in-hospital mortality in the larger population was undistinguishable from mortality in the investigated population (44 of 424 (10%), 95% CI 0.38.8%; p=0.824). No differences in mortality were found between the diagnostic groups in the larger population (nondiagnostic: 17 of 188 (9%) versus diagnostic: 27 of 236 (11%), 95% CI: 3.77.7; p=0.522).
The main findings of this study were: 1) in the population investigated a total 82 of 204 (40%) patients with CAP remained without aetiology, despite a substantial diagnostic effort; 2) multivariable analysis revealed age, renal and cardiac comorbidity, and nonalveolar radiological pattern as independent risk factors for an unknown aetiology; 3) the confounding role of cardiac comorbidity could be confirmed in a larger analysis; and 4) mortality was not different between patients with and without aetiology of CAP.
An important confounder which may have accounted for part of the undiagnosed cases is incomplete diagnostic work-up. A more extensive and aggressive diagnostic approach including antigen detection and polymerase chain reaction (PCR) may have increased the diagnostic yield. However, available evidence from the literature suggests that the diagnostic yield approaches a "ceiling effect" by
The rate of undiagnosed cases of CAP closely resemble those reported in prior studies e.g. two studies including >500 patients could not identify a pathogen in 50 and 45%, respectively 2, 3. Likewise, in a previous study by the authors group, they failed to establish an aetiology in 54% of pateints 9. Without any doubt, prior antimicrobial treatment is an important factor which decreases the diagnostic yield. Fang et al. 14 clearly showed the decline in diagnostic yield in the presence of such treatment. In another large series, no diagnosis was made in 45% of the cases. With adjustment for antimicrobial therapy before admission and for other logistical considerations, it was estimated that the aetiology could have been ascertained in 65% of the cases 5. The effect of antimicrobial treatment was analysed in more detail in the British Thoracic Society multicentre study. In this study, the rate of patients with evidence for pneumonia due to S. pneumoniae was more than twice as high in patients not given antimicrobial treatment before admission. Accordingly, ~55% of 150 cases with undetermined aetiology could have been accounted for by this pathogen 1. Thus, it seems that most of the reduction in diagnostic yield by antimicrobial pretreatment was due to a failure to identify S. pneumoniae. This view is further supported by studies showing that using diagnostic techniques which are insensitive for antimicrobial pretreatment, such as antigen testing, increase the rate of pneumococcal aetiologies by In the present study, the confounding factor of antimicrobial pretreatment was excluded. Nevertheless, it may still remain difficult to demonstrate a pneumococcal aetiology in nonbacteraemic pneumococcal pneumonia. Indirect evidence for a leading role of S. pneumoniae in undiagnosed patients was provided by a British study. In this report, the microbial aetiology was correctly predicted by a discriminant function analysis in 42% of cases. When a similar discriminant function analysis was applied to the one-third of patients in whom the microbial aetiology was never determined, most of these cases were predicted to be due to S. pneumoniae 10. However, the present results suggest that after exclusion of the confounding factor of antimicrobial pretreatment, nonpneumococcal aetiologies and host factors play an important role in undiagnosed patients. First, an unknown aetiology was more frequent in elderly patients, a cut-off of 70 yrs being associated with a two-fold increase in risk. Studies addressing elderly patients with CAP tended to have undiagnosed cases at the higher extreme of the reported range (57 and 58%, respectively) 20, 21. Accordingly, in a previous study by Örtquist et al. 4 age was also significantly associated with an undetermined aetiology. However, sputum, blood cultures, and paired sera were significantly less often obtained, and thus, the significance of this finding remained uncertain. The present results confirm the independent association of undetermined aetiology with age. This is an important finding, yet difficult to interpret. The most likely hypothesis is that elderly patients may be at higher risk for pathogens which are difficult to demonstrate. Among these, anaerobic pathogens involved in pneumonia due to silent (not gross) aspiration as well as viruses may be leading candidates. In fact, silent aspiration is a frequent event in elderly patients with CAP 22. Moreover, these pathogens would be compatible with the nonalveolar radiographic pattern which was found to predominate in these patients. Secondly, renal and cardiac comorbidity were independent predictors of an undetermined aetiology. Both volume overload due to renal failure as well as bronchial congestion due to congestive heart failure are risk factors for CAP 23. However, whether these conditions predispose to specific pathogens is largely unknown. It was found that M. catarrhalis as well as atypical pathogens (C. pneumoniae, M. pneumoniae, and Coxiella spp.) were significantly associated with cardiac comorbidity. These pathogens may easily be missed by the usual diagnostic approach. Alternatively, part of this association may be due to the fact that volume overload may mimic pneumonia. This may occur not only by confounding radiographic findings but also by a noninfectious inflammatory response to bronchial congestion. However, only approximately one-third of the infiltrates were bilateral in both groups, which substantially reduces the probability that volume overload was the leading cause of failure to obtain an aetiology. Conversely, parameters other than those specified such as echocardiography- or nonpneumonia-related treatment were not recorded, these may have provided additional evidence for the relative role of fluid overload. This issue clearly should be assessed more specifically in a future study. Finally, the nonalveolar radiographic pattern predominating in patients with undetermined aetiology strongly hints at pathogens other than pyogenic bacteria. Levy et al. 24 demonstrated that alveolar patterns were due to pyogenic bacteria in >90% of cases, whereas mixed patterns had a very heterogeneous aetiology including atypical bacterial and viral pathogens. The role of diagnostic work-up in terms of outcome of CAP remains controversial. So far, no study has demonstrated a beneficial effect of establishing an aetiology on any outcome measure 25. The only hint, with regards to the advantage of diagnostic tools, originates from a study of elderly patients. In this study, the outcome was better when blood cultures were performed within 24 h of admission 26. However, for this finding to be conclusive there should be an excess mortality in patients with undetermined aetiology. In the present study, although antimicrobial treatment was comparable in patients with and without defined aetiology, a corresponding difference was not found, and the authors were not aware of any other study which might have found such an association. The intention of this study was hypothesis generating and the results presented have to be interpreted accordingly. The statistical methods employed yielded results that were relevant to the population investigated therefore, they may change in different samples 27. In order to give the reader an idea about the stability of the conclusions reached on a selected sample, the analyses were repeated in a large less selected population (referred to as the larger population) with the same results. This fact together with the clinical plausibility of the results presented supports the importance of the hypothesis and should stimulate future studies on the repeatibility of the predictors presented. To conclude, age and host factors were found to be independent predictors of undetermined aetiology in community-acquired pneumonia. The predominance of a nonalveolar pattern in chest radiographs, leads the authors to believe that most undiagnosed cases may be due to pathogens which may be difficult to determine, particularly anaerobes involved in silent aspiration and atypical pathogens. Some of these cases may also have represented volume overload mimicking pneumonia. Although excess mortality in undiagnosed patients was not found, further efforts should be made to test the hypothesis generated from this study.
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